J3_5M1J_041

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGCUG*CACGUUCUAGCAUUCAAG*UGAU

Length

27 nucleotides

Bulged bases

5M1J|1|14|G|2549, 5M1J|1|14|U|2550, 5M1J|1|14|U|2551, 5M1J|1|14|C|2552, 5M1J|1|14|U|2553, 5M1J|1|14|A|2554, 5M1J|1|14|U|2558, 5M1J|1|14|U|2559, 5M1J|1|14|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|A|2529
5M1J|1|14|G|2530
5M1J|1|14|C|2531
5M1J|1|14|U|2532
5M1J|1|14|G|2533
*
5M1J|1|14|C|2546
5M1J|1|14|A|2547
5M1J|1|14|C|2548
5M1J|1|14|G|2549
5M1J|1|14|U|2550
5M1J|1|14|U|2551
5M1J|1|14|C|2552
5M1J|1|14|U|2553
5M1J|1|14|A|2554
5M1J|1|14|G|2555
5M1J|1|14|C|2556
5M1J|1|14|A|2557
5M1J|1|14|U|2558
5M1J|1|14|U|2559
5M1J|1|14|C|2560
5M1J|1|14|A|2561
5M1J|1|14|A|2562
5M1J|1|14|G|2563
*
5M1J|1|14|U|2578
5M1J|1|14|G|2579
5M1J|1|14|A|2580
5M1J|1|14|U|2581

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain A5

60S ribosomal protein L2-A

Chain B2

40S ribosomal protein S1-A

Chain G5

60S ribosomal protein L8-A

Chain X5

60S ribosomal protein L25

Chain Z5

60S ribosomal protein L27-A

Chain c5

60S ribosomal protein L30

Chain g5

60S ribosomal protein L34-A

Chain p5

60S ribosomal protein L43-B