J3_5M1J_043

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCAU*AGUAGAA*UAAAAG

Length

18 nucleotides

Bulged bases

5M1J|1|14|A|2703, 5M1J|1|14|A|2705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|C|2664
5M1J|1|14|U|2665
5M1J|1|14|C|2666
5M1J|1|14|A|2667
5M1J|1|14|U|2668
*
5M1J|1|14|A|2686
5M1J|1|14|G|2687
5M1J|1|14|U|2688
5M1J|1|14|A|2689
5M1J|1|14|G|2690
5M1J|1|14|A|2691
5M1J|1|14|A|2692
*
5M1J|1|14|U|2701
5M1J|1|14|A|2702
5M1J|1|14|A|2703
5M1J|1|14|A|2704
5M1J|1|14|A|2705
5M1J|1|14|G|2706

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 34

5S ribosomal RNA; 5S rRNA

Chain A3

Transfer RNA; tRNA

Chain D5

60S ribosomal protein L5

Chain J5

60S ribosomal protein L11-A

Chain T5

60S ribosomal protein L21-A