J3_5M1J_044

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AUAUAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCAUUU

Length

36 nucleotides

Bulged bases

5M1J|1|14|A|3172, 5M1J|1|14|G|3173, 5M1J|1|14|A|3215, 5M1J|1|14|G|3216, 5M1J|1|14|C|3217, 5M1J|1|14|G|3219, 5M1J|1|14|A|3268, 5M1J|1|14|U|3270, 5M1J|1|14|C|3272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|A|3168
5M1J|1|14|U|3169
5M1J|1|14|A|3170
5M1J|1|14|U|3171
5M1J|1|14|A|3172
5M1J|1|14|G|3173
5M1J|1|14|A|3174
5M1J|1|14|U|3175
5M1J|1|14|G|3176
*
5M1J|1|14|C|3212
5M1J|1|14|A|3213
5M1J|1|14|U|3214
5M1J|1|14|A|3215
5M1J|1|14|G|3216
5M1J|1|14|C|3217
5M1J|1|14|A|3218
5M1J|1|14|G|3219
5M1J|1|14|G|3220
*
5M1J|1|14|C|3265
5M1J|1|14|G|3266
5M1J|1|14|A|3267
5M1J|1|14|A|3268
5M1J|1|14|U|3269
5M1J|1|14|U|3270
5M1J|1|14|G|3271
5M1J|1|14|C|3272
5M1J|1|14|A|3273
5M1J|1|14|A|3274
5M1J|1|14|U|3275
5M1J|1|14|G|3276
5M1J|1|14|U|3277
5M1J|1|14|C|3278
5M1J|1|14|A|3279
5M1J|1|14|U|3280
5M1J|1|14|U|3281
5M1J|1|14|U|3282

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain E5

60S ribosomal protein L6-A

Chain K5

60S ribosomal protein L16-A

Chain M5

60S ribosomal protein L14-A

Chain P5

60S ribosomal protein L17-A

Chain f5

60S ribosomal protein L33-A