J3_5M1J_045

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5M1J|1|22|U|241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|22|A|213
5M1J|1|22|G|214
5M1J|1|22|A|215
5M1J|1|22|U|216
5M1J|1|22|A|217
5M1J|1|22|A|218
5M1J|1|22|A|219
5M1J|1|22|A|220
5M1J|1|22|A|221
5M1J|1|22|A|222
5M1J|1|22|U|223
5M1J|1|22|C|224
5M1J|1|22|A|225
5M1J|1|22|A|226
5M1J|1|22|U|227
5M1J|1|22|G|228
*
5M1J|1|22|C|237
5M1J|1|22|U|238
5M1J|1|22|C|239
5M1J|1|22|U|240
5M1J|1|22|U|241
5M1J|1|22|U|242
5M1J|1|22|G|243
*
5M1J|1|22|C|250
5M1J|1|22|A|251
5M1J|1|22|U|252

Current chains

Chain 22

18S ribosomal RNA

Nearby chains

Chain E2

40S ribosomal protein S4-A

Chain G2

40S ribosomal protein S6-A

Chain L2

40S ribosomal protein S11-A