J3_5M1J_053

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGG*UAG*CGUCGCU

Length

14 nucleotides

Bulged bases

5M1J|1|14|A|2060, 5M1J|1|14|C|2078, 5M1J|1|14|G|2079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|A|1960
5M1J|1|14|G|1961
5M1J|1|14|G|1962
5M1J|1|14|G|1963
*
5M1J|1|14|U|2059
5M1J|1|14|A|2060
5M1J|1|14|G|2061
*
5M1J|1|14|C|2075
5M1J|1|14|G|2076
5M1J|1|14|U|2077
5M1J|1|14|C|2078
5M1J|1|14|G|2079
5M1J|1|14|C|2080
5M1J|1|14|U|2081

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain Z5

60S ribosomal protein L27-A