J3_5MC6_006
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGAGC*GCUAC*GGAA
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MC6|1|2|U|1168
5MC6|1|2|G|1169
5MC6|1|2|G|1170
5MC6|1|2|A|1171
5MC6|1|2|G|1172
5MC6|1|2|C|1173
*
5MC6|1|2|G|1466
5MC6|1|2|C|1467
5MC6|1|2|U|1468
5MC6|1|2|A|1469
5MC6|1|2|C|1470
*
5MC6|1|2|G|1574
5MC6|1|2|G|1575
5MC6|1|2|A|1576
5MC6|1|2|A|1577
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S5
- Chain F
- 40S ribosomal protein S16-A
- Chain H
- 40S ribosomal protein S18-A
- Chain I
- 40S ribosomal protein S19-A
- Chain J
- 40S ribosomal protein S20
- Chain n
- Transfer RNA; tRNA
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