J3_5MC6_012

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACUG*CGUGCUGGGGAUA*UUCAACGAG

Length

27 nucleotides

Bulged bases

5MC6|1|2|U|1473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|C|1470
5MC6|1|2|A|1471
5MC6|1|2|C|1472
5MC6|1|2|U|1473
5MC6|1|2|G|1474
*
5MC6|1|2|C|1533
5MC6|1|2|G|1534
5MC6|1|2|U|1535
5MC6|1|2|G|1536
5MC6|1|2|C|1537
5MC6|1|2|U|1538
5MC6|1|2|G|1539
5MC6|1|2|G|1540
5MC6|1|2|G|1541
5MC6|1|2|G|1542
5MC6|1|2|A|1543
5MC6|1|2|U|1544
5MC6|1|2|A|1545
*
5MC6|1|2|U|1566
5MC6|1|2|U|1567
5MC6|1|2|C|1568
5MC6|1|2|A|1569
5MC6|1|2|A|1570
5MC6|1|2|C|1571
5MC6|1|2|G|1572
5MC6|1|2|A|1573
5MC6|1|2|G|1574

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A

Chain K

40S ribosomal protein S25-A