J3_5MC6_025
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 5MC6|1|BQ|G|2549, 5MC6|1|BQ|U|2550, 5MC6|1|BQ|U|2551, 5MC6|1|BQ|A|2554, 5MC6|1|BQ|U|2558, 5MC6|1|BQ|U|2559, 5MC6|1|BQ|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MC6_025 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.1757
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5MC6|1|BQ|A|2529
5MC6|1|BQ|G|2530
5MC6|1|BQ|C|2531
5MC6|1|BQ|U|2532
*
5MC6|1|BQ|A|2547
5MC6|1|BQ|C|2548
5MC6|1|BQ|G|2549
5MC6|1|BQ|U|2550
5MC6|1|BQ|U|2551
5MC6|1|BQ|C|2552
5MC6|1|BQ|U|2553
5MC6|1|BQ|A|2554
5MC6|1|BQ|G|2555
5MC6|1|BQ|C|2556
5MC6|1|BQ|A|2557
5MC6|1|BQ|U|2558
5MC6|1|BQ|U|2559
5MC6|1|BQ|C|2560
5MC6|1|BQ|A|2561
5MC6|1|BQ|A|2562
5MC6|1|BQ|G|2563
*
5MC6|1|BQ|U|2578
5MC6|1|BQ|G|2579
5MC6|1|BQ|A|2580
5MC6|1|BQ|U|2581
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8-A
- Chain AH
- 60S ribosomal protein L25
- Chain AN
- 60S ribosomal protein L27-A
- Chain AT
- 60S ribosomal protein L43-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain AY
- 60S ribosomal protein L30
- Chain BN
- 60S ribosomal protein L34-A
Coloring options: