J3_5MC6_028

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AGAUG*CUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MC6_028 not in the Motif Atlas

Homologous match to J3_5TBW_015

Geometric discrepancy: 0.1691

The information below is about J3_5TBW_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_48314.1

Basepair signature

cWW-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

5MC6|1|BQ|C|3298
5MC6|1|BQ|A|3299
5MC6|1|BQ|U|3300
*
5MC6|1|BQ|A|3314
5MC6|1|BQ|G|3315
5MC6|1|BQ|A|3316
5MC6|1|BQ|U|3317
5MC6|1|BQ|G|3318
*
5MC6|1|BQ|C|3388
5MC6|1|BQ|U|3389
5MC6|1|BQ|G|3390

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3

Chain BC

60S ribosomal protein L31-A