J3_5MC6_030

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5MC6|1|2|U|227, 5MC6|1|2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|A|213
5MC6|1|2|G|214
5MC6|1|2|A|215
5MC6|1|2|U|216
5MC6|1|2|A|217
5MC6|1|2|A|218
5MC6|1|2|A|219
5MC6|1|2|A|220
5MC6|1|2|A|221
5MC6|1|2|A|222
5MC6|1|2|U|223
5MC6|1|2|C|224
5MC6|1|2|A|225
5MC6|1|2|A|226
5MC6|1|2|U|227
5MC6|1|2|G|228
*
5MC6|1|2|C|237
5MC6|1|2|U|238
5MC6|1|2|C|239
5MC6|1|2|U|240
5MC6|1|2|U|241
5MC6|1|2|U|242
5MC6|1|2|G|243
*
5MC6|1|2|C|250
5MC6|1|2|A|251
5MC6|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A