J3_5MDV_016
3D structure
- PDB id
- 5MDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and RF2 bound to the 70S ribosome (accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 5MDV|1|2|U|723
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDV_016 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.0577
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5MDV|1|2|U|672
5MDV|1|2|A|673
*
5MDV|1|2|U|717
5MDV|1|2|A|718
5MDV|1|2|C|719
5MDV|1|2|C|720
5MDV|1|2|G|721
5MDV|1|2|G|722
5MDV|1|2|U|723
5MDV|1|2|G|724
5MDV|1|2|G|725
*
5MDV|1|2|C|732
5MDV|1|2|G|733
5MDV|1|2|G|734
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain k
- 30S ribosomal protein S6
- Chain p
- 30S ribosomal protein S11
- Chain t
- 30S ribosomal protein S15
- Chain w
- 30S ribosomal protein S18
- Chain z
- 30S ribosomal protein S21
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