J3_5MDY_020
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 5MDY|1|2|A|975, 5MDY|1|2|G|976, 5MDY|1|2|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDY_020 not in the Motif Atlas
- Homologous match to J3_5J7L_006
- Geometric discrepancy: 0.0737
- The information below is about J3_5J7L_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5MDY|1|2|U|955
5MDY|1|2|U|956
5MDY|1|2|U|957
5MDY|1|2|A|958
5MDY|1|2|A|959
5MDY|1|2|U|960
5MDY|1|2|U|961
5MDY|1|2|C|962
*
5MDY|1|2|G|973
5MDY|1|2|A|974
5MDY|1|2|A|975
5MDY|1|2|G|976
5MDY|1|2|A|977
5MDY|1|2|A|978
5MDY|1|2|C|979
5MDY|1|2|C|980
5MDY|1|2|U|981
5MDY|1|2|U|982
5MDY|1|2|A|983
5MDY|1|2|C|984
*
5MDY|1|2|G|1221
5MDY|1|2|G|1222
5MDY|1|2|C|1223
5MDY|1|2|U|1224
5MDY|1|2|A|1225
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Peptide chain release factor 2
- Chain o
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S14
- Chain x
- 30S ribosomal protein S19
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