J3_5MDY_027
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 5MDY|1|1|A|504, 5MDY|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDY_027 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1099
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5MDY|1|1|G|30
5MDY|1|1|C|31
*
5MDY|1|1|G|474
5MDY|1|1|C|475
5MDY|1|1|G|476
5MDY|1|1|A|477
5MDY|1|1|A|478
5MDY|1|1|A|479
5MDY|1|1|A|480
5MDY|1|1|G|481
5MDY|1|1|A|482
5MDY|1|1|A|483
5MDY|1|1|C|484
*
5MDY|1|1|G|496
5MDY|1|1|A|497
5MDY|1|1|G|498
5MDY|1|1|U|499
5MDY|1|1|G|500
5MDY|1|1|A|501
5MDY|1|1|A|502
5MDY|1|1|A|503
5MDY|1|1|A|504
5MDY|1|1|A|505
5MDY|1|1|G|506
5MDY|1|1|A|507
5MDY|1|1|A|508
5MDY|1|1|C|509
5MDY|1|1|C|510
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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