J3_5MDY_028
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CCUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 5MDY|1|1|U|34, 5MDY|1|1|U|448, 5MDY|1|1|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDY_028 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.0674
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
5MDY|1|1|C|32
5MDY|1|1|C|33
5MDY|1|1|U|34
5MDY|1|1|G|35
*
5MDY|1|1|C|445
5MDY|1|1|G|446
5MDY|1|1|A|447
5MDY|1|1|U|448
5MDY|1|1|A|449
5MDY|1|1|G|450
5MDY|1|1|U|451
5MDY|1|1|G|452
5MDY|1|1|A|453
5MDY|1|1|A|454
5MDY|1|1|C|455
5MDY|1|1|C|456
5MDY|1|1|A|457
5MDY|1|1|G|458
5MDY|1|1|U|459
5MDY|1|1|A|460
5MDY|1|1|C|461
*
5MDY|1|1|G|468
5MDY|1|1|G|469
5MDY|1|1|A|470
5MDY|1|1|A|471
5MDY|1|1|A|472
5MDY|1|1|G|473
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
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