J3_5MDZ_013
3D structure
- PDB id
- 5MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome (empty A site)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5MDZ|1|1|U|2833, 5MDZ|1|1|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MDZ_013 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1233
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5MDZ|1|1|G|2812
5MDZ|1|1|A|2813
5MDZ|1|1|A|2814
5MDZ|1|1|C|2815
*
5MDZ|1|1|G|2831
5MDZ|1|1|U|2832
5MDZ|1|1|U|2833
5MDZ|1|1|G|2834
5MDZ|1|1|A|2835
5MDZ|1|1|U|2836
*
5MDZ|1|1|A|2882
5MDZ|1|1|A|2883
5MDZ|1|1|U|2884
5MDZ|1|1|G|2885
5MDZ|1|1|A|2886
5MDZ|1|1|A|2887
5MDZ|1|1|C|2888
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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