J3_5MDZ_020

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

5MDZ|1|2|A|975, 5MDZ|1|2|G|976, 5MDZ|1|2|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MDZ_020 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.0707

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MDZ|1|2|U|955
5MDZ|1|2|U|956
5MDZ|1|2|U|957
5MDZ|1|2|A|958
5MDZ|1|2|A|959
5MDZ|1|2|U|960
5MDZ|1|2|U|961
5MDZ|1|2|C|962
*
5MDZ|1|2|G|973
5MDZ|1|2|A|974
5MDZ|1|2|A|975
5MDZ|1|2|G|976
5MDZ|1|2|A|977
5MDZ|1|2|A|978
5MDZ|1|2|C|979
5MDZ|1|2|C|980
5MDZ|1|2|U|981
5MDZ|1|2|U|982
5MDZ|1|2|A|983
5MDZ|1|2|C|984
*
5MDZ|1|2|G|1221
5MDZ|1|2|G|1222
5MDZ|1|2|C|1223
5MDZ|1|2|U|1224
5MDZ|1|2|A|1225

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S10

Chain r

30S ribosomal protein S13

Chain s

30S ribosomal protein S14

Chain x

30S ribosomal protein S19