J3_5ME0_004

3D structure

PDB id

5ME0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 1 (30S IC-1) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ME0_004 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0591

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

5ME0|1|A|C|936
5ME0|1|A|A|937
5ME0|1|A|A|938
5ME0|1|A|G|939
*
5ME0|1|A|C|1344
5ME0|1|A|U|1345
5ME0|1|A|A|1346
5ME0|1|A|G|1347
5ME0|1|A|U|1348
5ME0|1|A|A|1349
5ME0|1|A|A|1350
*
5ME0|1|A|U|1372
5ME0|1|A|G|1373
5ME0|1|A|A|1374
5ME0|1|A|A|1375
5ME0|1|A|U|1376
5ME0|1|A|A|1377
5ME0|1|A|C|1378
5ME0|1|A|G|1379

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9