J3_5ME1_015

3D structure

PDB id

5ME1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 30S Pre-Initiation Complex 2 (30S IC-2) Stalled by GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5ME1|1|A|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ME1_015 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.0865

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5ME1|1|A|C|990
5ME1|1|A|U|991
5ME1|1|A|U|992
5ME1|1|A|G|993
5ME1|1|A|A|994
5ME1|1|A|C|995
5ME1|1|A|A|996
5ME1|1|A|U|997
*
5ME1|1|A|A|1044
5ME1|1|A|C|1045
5ME1|1|A|A|1046
5ME1|1|A|G|1047
*
5ME1|1|A|C|1210
5ME1|1|A|U|1211
5ME1|1|A|U|1212
5ME1|1|A|A|1213
5ME1|1|A|C|1214
5ME1|1|A|G|1215

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14