J3_5MEI_063

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACGGUGGCC*GGAAUCCGCUAAGG*CAC

Length

27 nucleotides

Bulged bases

5MEI|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|1|G|1230
5MEI|1|1|A|1231
5MEI|1|1|C|1232
5MEI|1|1|G|1233
5MEI|1|1|G|1234
5MEI|1|1|U|1235
5MEI|1|1|G|1236
5MEI|1|1|G|1237
5MEI|1|1|C|1238
5MEI|1|1|C|1239
*
5MEI|1|1|G|1249
5MEI|1|1|G|1250
5MEI|1|1|A|1251
5MEI|1|1|A|1252
5MEI|1|1|U|1253
5MEI|1|1|C|1254
5MEI|1|1|C|1255
5MEI|1|1|G|1256
5MEI|1|1|C|1257
5MEI|1|1|U|1258
5MEI|1|1|A|1259
5MEI|1|1|A|1260
5MEI|1|1|G|1261
5MEI|1|1|G|1262
*
5MEI|1|1|C|1277
5MEI|1|1|A|1278
5MEI|1|1|C|1279

Current chains

Chain 1

25S ribosomal RNA

Nearby chains