J3_5MEI_075

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5MEI|1|A|U|238, 5MEI|1|A|C|239, 5MEI|1|A|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|A|A|213
5MEI|1|A|G|214
5MEI|1|A|A|215
5MEI|1|A|U|216
5MEI|1|A|A|217
5MEI|1|A|A|218
5MEI|1|A|A|219
5MEI|1|A|A|220
5MEI|1|A|A|221
5MEI|1|A|A|222
5MEI|1|A|U|223
5MEI|1|A|C|224
5MEI|1|A|A|225
5MEI|1|A|A|226
5MEI|1|A|U|227
5MEI|1|A|G|228
*
5MEI|1|A|C|237
5MEI|1|A|U|238
5MEI|1|A|C|239
5MEI|1|A|U|240
5MEI|1|A|U|241
5MEI|1|A|U|242
5MEI|1|A|G|243
*
5MEI|1|A|C|250
5MEI|1|A|A|251
5MEI|1|A|U|252

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A

Chain M

40S ribosomal protein S11-A