J3_5MEI_085

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AUUG*CUUAUUC*GAAGACAUU

Length

20 nucleotides

Bulged bases

5MEI|1|AR|U|2514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|AR|A|2432
5MEI|1|AR|U|2433
5MEI|1|AR|U|2434
5MEI|1|AR|G|2435
*
5MEI|1|AR|C|2512
5MEI|1|AR|U|2513
5MEI|1|AR|U|2514
5MEI|1|AR|A|2515
5MEI|1|AR|U|2516
5MEI|1|AR|U|2517
5MEI|1|AR|C|2518
*
5MEI|1|AR|G|2589
5MEI|1|AR|A|2590
5MEI|1|AR|A|2591
5MEI|1|AR|G|2592
5MEI|1|AR|A|2593
5MEI|1|AR|C|2594
5MEI|1|AR|A|2595
5MEI|1|AR|U|2596
5MEI|1|AR|U|2597

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CJ

60S ribosomal protein L8-A

Chain CP

60S ribosomal protein L15-A

Chain DK

60S ribosomal protein L36-A