3D structure

PDB id
5MGP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5MGP_001 not in the Motif Atlas
Homologous match to J3_5J7L_036
Geometric discrepancy: 0.0712
The information below is about J3_5J7L_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

5MGP|1|A|G|30
5MGP|1|A|C|31
*
5MGP|1|A|G|474
5MGP|1|A|C|475
5MGP|1|A|G|476
5MGP|1|A|A|477
5MGP|1|A|A|478
5MGP|1|A|A|479
5MGP|1|A|A|480
5MGP|1|A|G|481
*
5MGP|1|A|C|509
5MGP|1|A|C|510

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
50S ribosomal protein L20
Chain U
50S ribosomal protein L24

Coloring options:


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