3D structure

PDB id
5MGP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAUCUA*UGG*CAAA
Length
14 nucleotides
Bulged bases
5MGP|1|A|U|686, 5MGP|1|A|A|792
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5MGP_003 not in the Motif Atlas
Homologous match to J3_7RQB_004
Geometric discrepancy: 0.3193
The information below is about J3_7RQB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.4
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

5MGP|1|A|U|683
5MGP|1|A|G|684
5MGP|1|A|A|685
5MGP|1|A|U|686
5MGP|1|A|C|687
5MGP|1|A|U|688
5MGP|1|A|A|689
*
5MGP|1|A|U|773
5MGP|1|A|G|774
5MGP|1|A|G|775
*
5MGP|1|A|C|791
5MGP|1|A|A|792
5MGP|1|A|A|793
5MGP|1|A|A|794

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain C
50S ribosomal protein L2

Coloring options:


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