J3_5MGP_003
3D structure
- PDB id
- 5MGP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAUCUA*UGG*CAAA
- Length
- 14 nucleotides
- Bulged bases
- 5MGP|1|A|U|686, 5MGP|1|A|A|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MGP_003 not in the Motif Atlas
- Homologous match to J3_7RQB_004
- Geometric discrepancy: 0.3193
- The information below is about J3_7RQB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5MGP|1|A|U|683
5MGP|1|A|G|684
5MGP|1|A|A|685
5MGP|1|A|U|686
5MGP|1|A|C|687
5MGP|1|A|U|688
5MGP|1|A|A|689
*
5MGP|1|A|U|773
5MGP|1|A|G|774
5MGP|1|A|G|775
*
5MGP|1|A|C|791
5MGP|1|A|A|792
5MGP|1|A|A|793
5MGP|1|A|A|794
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain C
- 50S ribosomal protein L2
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