J3_5MGP_003

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5MGP|1|A|U|686, 5MGP|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MGP_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3193

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5MGP|1|A|U|683
5MGP|1|A|G|684
5MGP|1|A|A|685
5MGP|1|A|U|686
5MGP|1|A|C|687
5MGP|1|A|U|688
5MGP|1|A|A|689
*
5MGP|1|A|U|773
5MGP|1|A|G|774
5MGP|1|A|G|775
*
5MGP|1|A|C|791
5MGP|1|A|A|792
5MGP|1|A|A|793
5MGP|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2