J3_5MLC_003

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

5MLC|1|A|U|697, 5MLC|1|A|G|803

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MLC_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.2131

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5MLC|1|A|U|694
5MLC|1|A|G|695
5MLC|1|A|A|696
5MLC|1|A|U|697
5MLC|1|A|C|698
5MLC|1|A|U|699
5MLC|1|A|A|700
*
5MLC|1|A|U|784
5MLC|1|A|A|785
5MLC|1|A|G|786
*
5MLC|1|A|C|802
5MLC|1|A|G|803
5MLC|1|A|A|804
5MLC|1|A|A|805

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain D

50S ribosomal protein L2, chloroplastic