J3_5MLC_008

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAGGGC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MLC_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1515

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5MLC|1|A|U|1365
5MLC|1|A|C|1366
5MLC|1|A|A|1367
5MLC|1|A|G|1368
5MLC|1|A|G|1369
5MLC|1|A|G|1370
5MLC|1|A|C|1371
*
5MLC|1|A|G|1402
5MLC|1|A|A|1403
5MLC|1|A|C|1404
5MLC|1|A|A|1405
5MLC|1|A|A|1406
*
5MLC|1|A|U|1423
5MLC|1|A|A|1424

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 4

50S ribosomal protein L34, chloroplastic

Chain 7

PSRP5alpha, chloroplastic

Chain V

50S ribosomal protein L23, chloroplastic