J3_5MLC_011

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5MLC|1|A|C|2535, 5MLC|1|A|A|2536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MLC_011 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0957

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

5MLC|1|A|C|2534
5MLC|1|A|C|2535
5MLC|1|A|A|2536
5MLC|1|A|C|2537
*
5MLC|1|A|G|2562
5MLC|1|A|U|2563
5MLC|1|A|U|2564
*
5MLC|1|A|A|2578
5MLC|1|A|U|2579
5MLC|1|A|U|2580
5MLC|1|A|A|2581
5MLC|1|A|A|2582
5MLC|1|A|A|2583
5MLC|1|A|G|2584

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain M

50S ribosomal protein L14, chloroplastic