J3_5MLC_017

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAU*AACCCUAGAU*AGUAG

Length

20 nucleotides

Bulged bases

5MLC|1|A|U|330

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MLC_017 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1045

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5MLC|1|A|C|307
5MLC|1|A|G|308
5MLC|1|A|A|309
5MLC|1|A|A|310
5MLC|1|A|U|311
*
5MLC|1|A|A|325
5MLC|1|A|A|326
5MLC|1|A|C|327
5MLC|1|A|C|328
5MLC|1|A|C|329
5MLC|1|A|U|330
5MLC|1|A|A|331
5MLC|1|A|G|332
5MLC|1|A|A|333
5MLC|1|A|U|334
*
5MLC|1|A|A|346
5MLC|1|A|G|347
5MLC|1|A|U|348
5MLC|1|A|A|349
5MLC|1|A|G|350

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain F

50S ribosomal protein L4, chloroplastic

Chain W

50S ribosomal protein L24, chloroplastic