J3_5MLC_019

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MLC_019 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.093

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5MLC|1|A|G|1445
5MLC|1|A|G|1446
5MLC|1|A|G|1447
5MLC|1|A|A|1448
5MLC|1|A|C|1449
5MLC|1|A|G|1450
*
5MLC|1|A|C|1598
5MLC|1|A|C|1599
*
5MLC|1|A|G|1602
5MLC|1|A|A|1603
5MLC|1|A|A|1604
5MLC|1|A|A|1605
5MLC|1|A|A|1606
5MLC|1|A|G|1607
5MLC|1|A|C|1608

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 7

PSRP5alpha, chloroplastic

Chain D

50S ribosomal protein L2, chloroplastic