J3_5MMI_001
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCGUAUUAAUCG*UGC*GAUUC
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MMI_001 not in the Motif Atlas
- Homologous match to J3_4WF9_001
- Geometric discrepancy: 0.2703
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5MMI|1|A|G|55
5MMI|1|A|C|56
5MMI|1|A|G|57
5MMI|1|A|U|58
5MMI|1|A|A|59
5MMI|1|A|U|60
5MMI|1|A|U|61
5MMI|1|A|A|62
5MMI|1|A|A|63
5MMI|1|A|U|64
5MMI|1|A|C|65
5MMI|1|A|G|66
*
5MMI|1|A|U|73
5MMI|1|A|G|74
5MMI|1|A|C|75
*
5MMI|1|A|G|108
5MMI|1|A|A|109
5MMI|1|A|U|110
5MMI|1|A|U|111
5MMI|1|A|C|112
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L34, chloroplastic
- Chain U
- 50S ribosomal protein L23, chloroplastic
- Chain V
- plastid ribosomal protein uL24c
- Chain Z
- plastid ribosomal protein uL29c
Coloring options: