J3_5MMI_002
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UAAAC*GGGUUGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 5MMI|1|A|U|275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MMI_002 not in the Motif Atlas
- Homologous match to J3_7RQB_003
- Geometric discrepancy: 0.117
- The information below is about J3_7RQB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97921.1
- Basepair signature
- cWW-F-F-tSH-tWH-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5MMI|1|A|U|254
5MMI|1|A|A|255
5MMI|1|A|A|256
5MMI|1|A|A|257
5MMI|1|A|C|258
*
5MMI|1|A|G|269
5MMI|1|A|G|270
5MMI|1|A|G|271
5MMI|1|A|U|272
5MMI|1|A|U|273
5MMI|1|A|G|274
5MMI|1|A|U|275
5MMI|1|A|G|276
*
5MMI|1|A|C|381
5MMI|1|A|G|382
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain Y
- plastid ribosomal protein bL28c
Coloring options: