J3_5MMI_022
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUG*CCUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 5MMI|1|A|U|2407, 5MMI|1|A|A|2443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5MMI_022 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1025
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5MMI|1|A|G|2299
5MMI|1|A|U|2300
5MMI|1|A|G|2301
*
5MMI|1|A|C|2401
5MMI|1|A|C|2402
5MMI|1|A|U|2403
5MMI|1|A|U|2404
5MMI|1|A|A|2405
5MMI|1|A|G|2406
5MMI|1|A|U|2407
5MMI|1|A|G|2408
5MMI|1|A|A|2409
5MMI|1|A|U|2410
5MMI|1|A|C|2411
5MMI|1|A|C|2412
*
5MMI|1|A|G|2438
5MMI|1|A|C|2439
5MMI|1|A|U|2440
5MMI|1|A|C|2441
5MMI|1|A|A|2442
5MMI|1|A|A|2443
5MMI|1|A|C|2444
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L33, chloroplastic
- Chain 4
- 50S ribosomal protein L35, chloroplastic
- Chain M
- plastid ribosomal protein uL15c
- Chain X
- plastid ribosomal protein bL27c
- Chain z
- E-site tRNA
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