J3_5MQ0_002
3D structure
- PDB id
- 5MQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a spliceosome remodeled for exon ligation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.17 Å
Loop
- Sequence
- UGCCUUUUGG*CAG*CCGUUUUACA
- Length
- 23 nucleotides
- Bulged bases
- 5MQ0|1|2|U|18, 5MQ0|1|2|U|19, 5MQ0|1|2|G|20, 5MQ0|1|6|U|89, 5MQ0|1|6|U|90, 5MQ0|1|6|A|91, 5MQ0|1|6|C|92
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MQ0|1|2|U|12
5MQ0|1|2|G|13
5MQ0|1|2|C|14
5MQ0|1|2|C|15
5MQ0|1|2|U|16
5MQ0|1|2|U|17
5MQ0|1|2|U|18
5MQ0|1|2|U|19
5MQ0|1|2|G|20
5MQ0|1|2|G|21
*
5MQ0|1|6|C|61
5MQ0|1|6|A|62
5MQ0|1|6|G|63
*
5MQ0|1|6|C|84
5MQ0|1|6|C|85
5MQ0|1|6|G|86
5MQ0|1|6|U|87
5MQ0|1|6|U|88
5MQ0|1|6|U|89
5MQ0|1|6|U|90
5MQ0|1|6|A|91
5MQ0|1|6|C|92
5MQ0|1|6|A|93
Current chains
- Chain 2
- S.cerevisiae chromosome II reading frame ORF YBR230c
- Chain 6
- Saccharomyces cerevisiae strain T.52_2H chromosome XII sequence
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain E
- 5'-EXON OF UBC4 PRE-MRNA
- Chain J
- Pre-mRNA-splicing factor PRP46
- Chain K
- Pre-mRNA-processing protein 45
- Chain O
- Pre-mRNA-splicing factor CEF1
- Chain P
- Pre-mRNA-splicing factor CWC15
- Chain S
- Pre-mRNA-splicing factor CLF1
- Chain y
- Pre-mRNA-splicing factor SYF2
Coloring options: