J3_5MRC_001

3D structure

PDB id

5MRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

CGAUCUA*UAG*CUGG

Length

14 nucleotides

Bulged bases

5MRC|1|A|U|595, 5MRC|1|A|U|683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRC_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.1846

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5MRC|1|A|C|592
5MRC|1|A|G|593
5MRC|1|A|A|594
5MRC|1|A|U|595
5MRC|1|A|C|596
5MRC|1|A|U|597
5MRC|1|A|A|598
*
5MRC|1|A|U|664
5MRC|1|A|A|665
5MRC|1|A|G|666
*
5MRC|1|A|C|682
5MRC|1|A|U|683
5MRC|1|A|G|684
5MRC|1|A|G|685

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m

Chain Y

bL34m