J3_5MRE_001

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAUCUA*UAG*CUGG

Length

14 nucleotides

Bulged bases

5MRE|1|A|U|595, 5MRE|1|A|U|683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRE_001 not in the Motif Atlas

Geometric match to J3_8VTW_001

Geometric discrepancy: 0.1435

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5MRE|1|A|C|592
5MRE|1|A|G|593
5MRE|1|A|A|594
5MRE|1|A|U|595
5MRE|1|A|C|596
5MRE|1|A|U|597
5MRE|1|A|A|598
*
5MRE|1|A|U|664
5MRE|1|A|A|665
5MRE|1|A|G|666
*
5MRE|1|A|C|682
5MRE|1|A|U|683
5MRE|1|A|G|684
5MRE|1|A|G|685

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

uL2m

Chain Y

bL34m