J3_5MRE_022

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUAAUUC*GACUAACCUUAC*GGUAA

Length

25 nucleotides

Bulged bases

5MRE|1|aa|C|1040, 5MRE|1|aa|U|1041, 5MRE|1|aa|A|1043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRE_022 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.0971

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MRE|1|aa|U|1020
5MRE|1|aa|U|1021
5MRE|1|aa|U|1022
5MRE|1|aa|A|1023
5MRE|1|aa|A|1024
5MRE|1|aa|U|1025
5MRE|1|aa|U|1026
5MRE|1|aa|C|1027
*
5MRE|1|aa|G|1038
5MRE|1|aa|A|1039
5MRE|1|aa|C|1040
5MRE|1|aa|U|1041
5MRE|1|aa|A|1042
5MRE|1|aa|A|1043
5MRE|1|aa|C|1044
5MRE|1|aa|C|1045
5MRE|1|aa|U|1046
5MRE|1|aa|U|1047
5MRE|1|aa|A|1048
5MRE|1|aa|C|1049
*
5MRE|1|aa|G|1253
5MRE|1|aa|G|1254
5MRE|1|aa|U|1255
5MRE|1|aa|A|1256
5MRE|1|aa|A|1257

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain JJ

uS10m

Chain MM

uS13m

Chain NN

uS14m

Chain SS

uS19m