J3_5MRE_023

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUG*CAG*CUUAUA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRE_023 not in the Motif Atlas

Geometric match to J3_4LFB_005

Geometric discrepancy: 0.2419

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5MRE|1|aa|U|1055
5MRE|1|aa|U|1056
5MRE|1|aa|U|1057
5MRE|1|aa|G|1058
*
5MRE|1|aa|C|1092
5MRE|1|aa|A|1093
5MRE|1|aa|G|1094
*
5MRE|1|aa|C|1242
5MRE|1|aa|U|1243
5MRE|1|aa|U|1244
5MRE|1|aa|A|1245
5MRE|1|aa|U|1246
5MRE|1|aa|A|1247

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain NN

uS14m

Chain XX

mS33