J3_5MRE_025

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UG*UUUUAG*CAUAAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRE_025 not in the Motif Atlas

Homologous match to J3_5J7L_009

Geometric discrepancy: 0.574

The information below is about J3_5J7L_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.3

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5MRE|1|aa|U|1120
5MRE|1|aa|G|1121
*
5MRE|1|aa|U|1130
5MRE|1|aa|U|1131
5MRE|1|aa|U|1132
5MRE|1|aa|U|1133
5MRE|1|aa|A|1134
5MRE|1|aa|G|1135
*
5MRE|1|aa|C|1144
5MRE|1|aa|A|1145
5MRE|1|aa|U|1146
5MRE|1|aa|A|1147
5MRE|1|aa|A|1148
5MRE|1|aa|A|1149

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain BB

uS2m

Chain EE

uS5m

Chain II

uS9m

Chain ZZ

mS37