J3_5MRE_031

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACAUGAC*GAGGAAUAU*AGU

Length

19 nucleotides

Bulged bases

5MRE|1|aa|A|55, 5MRE|1|aa|G|57, 5MRE|1|aa|A|58

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRE_031 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0854

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5MRE|1|aa|A|53
5MRE|1|aa|C|54
5MRE|1|aa|A|55
5MRE|1|aa|U|56
5MRE|1|aa|G|57
5MRE|1|aa|A|58
5MRE|1|aa|C|59
*
5MRE|1|aa|G|363
5MRE|1|aa|A|364
5MRE|1|aa|G|365
5MRE|1|aa|G|366
5MRE|1|aa|A|367
5MRE|1|aa|A|368
5MRE|1|aa|U|369
5MRE|1|aa|A|370
5MRE|1|aa|U|371
*
5MRE|1|aa|A|397
5MRE|1|aa|G|398
5MRE|1|aa|U|399

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain LL

uS12m

Chain PP

bS16m