J3_5MRF_022

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UUUAAUUC*GACUAACCUUAC*GGUAA

Length

25 nucleotides

Bulged bases

5MRF|1|aa|C|1040, 5MRF|1|aa|U|1041, 5MRF|1|aa|A|1043

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRF_022 not in the Motif Atlas

Homologous match to J3_5J7L_006

Geometric discrepancy: 0.1244

The information below is about J3_5J7L_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5MRF|1|aa|U|1020
5MRF|1|aa|U|1021
5MRF|1|aa|U|1022
5MRF|1|aa|A|1023
5MRF|1|aa|A|1024
5MRF|1|aa|U|1025
5MRF|1|aa|U|1026
5MRF|1|aa|C|1027
*
5MRF|1|aa|G|1038
5MRF|1|aa|A|1039
5MRF|1|aa|C|1040
5MRF|1|aa|U|1041
5MRF|1|aa|A|1042
5MRF|1|aa|A|1043
5MRF|1|aa|C|1044
5MRF|1|aa|C|1045
5MRF|1|aa|U|1046
5MRF|1|aa|U|1047
5MRF|1|aa|A|1048
5MRF|1|aa|C|1049
*
5MRF|1|aa|G|1253
5MRF|1|aa|G|1254
5MRF|1|aa|U|1255
5MRF|1|aa|A|1256
5MRF|1|aa|A|1257

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain JJ

uS10m

Chain MM

uS13m

Chain NN

uS14m

Chain SS

uS19m