J3_5MRF_023

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UUUG*CAG*CUUAUA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRF_023 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2241

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

5MRF|1|aa|U|1055
5MRF|1|aa|U|1056
5MRF|1|aa|U|1057
5MRF|1|aa|G|1058
*
5MRF|1|aa|C|1092
5MRF|1|aa|A|1093
5MRF|1|aa|G|1094
*
5MRF|1|aa|C|1242
5MRF|1|aa|U|1243
5MRF|1|aa|U|1244
5MRF|1|aa|A|1245
5MRF|1|aa|U|1246
5MRF|1|aa|A|1247

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain NN

uS14m

Chain XX

mS33