J3_5MRF_024

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

CUUUAG*CAAAACU*AAUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRF_024 not in the Motif Atlas

Homologous match to J3_5J7L_008

Geometric discrepancy: 0.2273

The information below is about J3_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08394.3

Basepair signature

cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5MRF|1|aa|C|1110
5MRF|1|aa|U|1111
5MRF|1|aa|U|1112
5MRF|1|aa|U|1113
5MRF|1|aa|A|1114
5MRF|1|aa|G|1115
*
5MRF|1|aa|C|1154
5MRF|1|aa|A|1155
5MRF|1|aa|A|1156
5MRF|1|aa|A|1157
5MRF|1|aa|A|1158
5MRF|1|aa|C|1159
5MRF|1|aa|U|1160
*
5MRF|1|aa|A|1219
5MRF|1|aa|A|1220
5MRF|1|aa|U|1221
5MRF|1|aa|U|1222
5MRF|1|aa|A|1223
5MRF|1|aa|A|1224
5MRF|1|aa|G|1225

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain CC

uS3m

Chain EE

uS5m

Chain II

uS9m

Chain JJ

uS10m

Chain NN

uS14m