J3_5MRF_032

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

UGA*UUAGA*UGACA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5MRF_032 not in the Motif Atlas

Homologous match to J3_4LFB_015

Geometric discrepancy: 0.1542

The information below is about J3_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.5

Basepair signature

cWW-F-cWW-cWW-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5MRF|1|aa|U|696
5MRF|1|aa|G|697
5MRF|1|aa|A|698
*
5MRF|1|aa|U|714
5MRF|1|aa|U|715
5MRF|1|aa|A|716
5MRF|1|aa|G|717
5MRF|1|aa|A|718
*
5MRF|1|aa|U|816
5MRF|1|aa|G|817
5MRF|1|aa|A|818
5MRF|1|aa|C|819
5MRF|1|aa|A|820

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain HH

uS8m

Chain LL

uS12m

Chain OO

uS15m

Chain QQ

uS17m

Chain UU

mS23

Chain VV

mS26