J3_5NCO_013
3D structure
- PDB id
- 5NCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5NCO|1|A|U|2833, 5NCO|1|A|A|2835
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NCO_013 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1552
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5NCO|1|A|G|2812
5NCO|1|A|A|2813
5NCO|1|A|A|2814
5NCO|1|A|C|2815
*
5NCO|1|A|G|2831
5NCO|1|A|U|2832
5NCO|1|A|U|2833
5NCO|1|A|G|2834
5NCO|1|A|A|2835
5NCO|1|A|U|2836
*
5NCO|1|A|A|2882
5NCO|1|A|A|2883
5NCO|1|A|U|2884
5NCO|1|A|G|2885
5NCO|1|A|A|2886
5NCO|1|A|A|2887
5NCO|1|A|C|2888
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain O
- 50S ribosomal protein L17
- Chain T
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
- Chain i
- Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein
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