J3_5NCO_015
3D structure
- PDB id
- 5NCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 5NCO|1|A|A|504, 5NCO|1|A|A|508
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5NCO_015 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.1257
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
5NCO|1|A|G|30
5NCO|1|A|C|31
*
5NCO|1|A|G|474
5NCO|1|A|C|475
5NCO|1|A|G|476
5NCO|1|A|A|477
5NCO|1|A|A|478
5NCO|1|A|A|479
5NCO|1|A|A|480
5NCO|1|A|G|481
5NCO|1|A|A|482
5NCO|1|A|A|483
5NCO|1|A|C|484
*
5NCO|1|A|G|496
5NCO|1|A|A|497
5NCO|1|A|G|498
5NCO|1|A|U|499
5NCO|1|A|G|500
5NCO|1|A|A|501
5NCO|1|A|A|502
5NCO|1|A|A|503
5NCO|1|A|A|504
5NCO|1|A|A|505
5NCO|1|A|G|506
5NCO|1|A|A|507
5NCO|1|A|A|508
5NCO|1|A|C|509
5NCO|1|A|C|510
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain R
- 50S ribosomal protein L20
- Chain T
- 50S ribosomal protein L22
- Chain V
- 50S ribosomal protein L24
- Chain i
- Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein
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