J3_5ND8_005

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND8_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.1149

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5ND8|1|A|C|743
5ND8|1|A|A|744
5ND8|1|A|G|745
*
5ND8|1|A|C|777
5ND8|1|A|G|778
5ND8|1|A|A|779
5ND8|1|A|A|780
5ND8|1|A|C|781
*
5ND8|1|A|G|805
5ND8|1|A|A|806
5ND8|1|A|U|807
5ND8|1|A|G|808

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2