J3_5ND8_020

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CAG*CUUAUG

Length

13 nucleotides

Bulged bases

5ND8|1|a|U|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND8_020 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1966

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

5ND8|1|a|C|1000
5ND8|1|a|U|1001
5ND8|1|a|U|1002
5ND8|1|a|G|1003
*
5ND8|1|a|C|1057
5ND8|1|a|A|1058
5ND8|1|a|G|1059
*
5ND8|1|a|C|1221
5ND8|1|a|U|1222
5ND8|1|a|U|1223
5ND8|1|a|A|1224
5ND8|1|a|U|1225
5ND8|1|a|G|1226

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z