J3_5ND8_032

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCUAAU*AGGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

5ND8|1|a|C|49, 5ND8|1|a|A|51, 5ND8|1|a|A|52

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND8_032 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1354

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5ND8|1|a|G|47
5ND8|1|a|C|48
5ND8|1|a|C|49
5ND8|1|a|U|50
5ND8|1|a|A|51
5ND8|1|a|A|52
5ND8|1|a|U|53
*
5ND8|1|a|A|367
5ND8|1|a|G|368
5ND8|1|a|G|369
5ND8|1|a|G|370
5ND8|1|a|A|371
5ND8|1|a|A|372
5ND8|1|a|U|373
5ND8|1|a|C|374
5ND8|1|a|U|375
*
5ND8|1|a|A|401
5ND8|1|a|G|402
5ND8|1|a|C|403

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16