J3_5ND8_038
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ND8_038 not in the Motif Atlas
- Homologous match to J3_5J7L_052
- Geometric discrepancy: 0.1616
- The information below is about J3_5J7L_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
5ND8|1|a|C|946
5ND8|1|a|A|947
5ND8|1|a|A|948
5ND8|1|a|G|949
*
5ND8|1|a|C|1355
5ND8|1|a|U|1356
5ND8|1|a|A|1357
5ND8|1|a|G|1358
5ND8|1|a|U|1359
5ND8|1|a|A|1360
5ND8|1|a|A|1361
*
5ND8|1|a|U|1383
5ND8|1|a|G|1384
5ND8|1|a|A|1385
5ND8|1|a|A|1386
5ND8|1|a|U|1387
5ND8|1|a|A|1388
5ND8|1|a|C|1389
5ND8|1|a|G|1390
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
- Chain v
- Ribosome hibernation promotion factor
Coloring options: