J3_5ND9_001

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND9_001 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.1259

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5ND9|1|A|G|30
5ND9|1|A|C|31
*
5ND9|1|A|G|520
5ND9|1|A|U|521
5ND9|1|A|G|522
5ND9|1|A|A|523
5ND9|1|A|A|524
5ND9|1|A|A|525
5ND9|1|A|A|526
5ND9|1|A|G|527
*
5ND9|1|A|C|554
5ND9|1|A|C|555

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L20

Chain X

50S ribosomal protein L24