J3_5ND9_008

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCGGGUC*GAUAA*UA

Length

14 nucleotides

Bulged bases

5ND9|1|A|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ND9_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1671

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5ND9|1|A|U|1381
5ND9|1|A|C|1382
5ND9|1|A|G|1383
5ND9|1|A|G|1384
5ND9|1|A|G|1385
5ND9|1|A|U|1386
5ND9|1|A|C|1387
*
5ND9|1|A|G|1418
5ND9|1|A|A|1419
5ND9|1|A|U|1420
5ND9|1|A|A|1421
5ND9|1|A|A|1422
*
5ND9|1|A|U|1439
5ND9|1|A|A|1440

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23